pacman::p_load(sf, raster, spatstat, sparr, tmap, tidyverse)TH1: Geospatial Analytics for Social Good
Take Home Exercise 1: Application of Spatial and Spatio-temporal Point Patterns Analysis to discover the geographical distribution of Armed Conflict in Myanmar
TH1.1 Setting the Scene
Millions of people have their lives shattered by armed conflict every year. One of these is the Myanmar Civil War, a significant escalation of the long-running Myanmar Conflict in response to the 2021 coup d’etat.
Geospatial analtyics holds the potential to address complex problems facing society, such as this one. This study serves to discover the sptial and spatio-temporal distribution (spread) of the armed conflict in Myanmar by applying spatial point pattern analysis (SPPA) methods.
TH1.1.1 Loading R packages
The R packages we will use today are:
sftmapspatstatsparrrastermaptools
TH1.2 The Data
Armed conflict data in Myanmar between 2010 and 2023 was downloaded from the Armed Conflict Location & Event Database (ACLED), an independent, impartial, international non-profit organization collecting data on violent conflicts and protests in all countries and territories in the world. We will be superimposing these locations with the geogrpahical boundary and subdivisions of the country, from the Myanmar Information Management Unit (MIMU).
We are interested in conflict events from 2019 onwards - starting from a year before the COVID-19 pandemic and 2 years before the 2021 coup - cumulating into the civil war of today.
TH1.2.1 Loading armed conflict data into tibble object
Here we load our aspatial armed conflict data into a tibble object.
acled_mya <- read_csv("data/2021-01-01-2024-09-16-Southeast_Asia-Myanmar.csv")Rows: 53653 Columns: 31
── Column specification ────────────────────────────────────────────────────────
Delimiter: ","
chr (20): event_id_cnty, event_date, disorder_type, event_type, sub_event_ty...
dbl (11): year, time_precision, inter1, inter2, interaction, iso, latitude, ...
ℹ Use `spec()` to retrieve the full column specification for this data.
ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.head(acled_mya)# A tibble: 6 × 31
event_id_cnty event_date year time_precision disorder_type event_type
<chr> <chr> <dbl> <dbl> <chr> <chr>
1 MMR66329 06 September 2024 2024 1 Political vio… Battles
2 MMR66334 06 September 2024 2024 1 Political vio… Explosion…
3 MMR66353 06 September 2024 2024 1 Political vio… Explosion…
4 MMR66365 06 September 2024 2024 1 Political vio… Explosion…
5 MMR66368 06 September 2024 2024 1 Political vio… Battles
6 MMR66422 06 September 2024 2024 1 Political vio… Explosion…
# ℹ 25 more variables: sub_event_type <chr>, actor1 <chr>, assoc_actor_1 <chr>,
# inter1 <dbl>, actor2 <chr>, assoc_actor_2 <chr>, inter2 <dbl>,
# interaction <dbl>, civilian_targeting <chr>, iso <dbl>, region <chr>,
# country <chr>, admin1 <chr>, admin2 <chr>, admin3 <chr>, location <chr>,
# latitude <dbl>, longitude <dbl>, geo_precision <dbl>, source <chr>,
# source_scale <chr>, notes <chr>, fatalities <dbl>, tags <chr>,
# timestamp <dbl>TH1.2.2 Loading administrative boundaries into sf object
Three representations of Myanmar’s geography exist on the MIMU repository - Admin1 subdivides the country into its states and regions only, while Admin2 subdivides the country by its smaller districts, and Admin3 its townships. Further, the ACLED labels each incident with all 3 representations. For simplicity and ease of understanding, we shall use the Admin1 representation.
mmr_admin1 <- st_read(dsn = "data/mmr_polbnda_adm1_250k_mimu_1", layer = "mmr_polbnda_adm1_250k_mimu_1")Reading layer `mmr_polbnda_adm1_250k_mimu_1' from data source
`/Users/kendricktty/Gits/smu_cs/is415-site/TakeHome/TakeHome1/data/mmr_polbnda_adm1_250k_mimu_1'
using driver `ESRI Shapefile'
Simple feature collection with 15 features and 6 fields
Geometry type: MULTIPOLYGON
Dimension: XY
Bounding box: xmin: 92.1721 ymin: 9.696844 xmax: 101.17 ymax: 28.54554
Geodetic CRS: WGS 84mmr_admin1Simple feature collection with 15 features and 6 fields
Geometry type: MULTIPOLYGON
Dimension: XY
Bounding box: xmin: 92.1721 ymin: 9.696844 xmax: 101.17 ymax: 28.54554
Geodetic CRS: WGS 84
First 10 features:
OBJECTID ST ST_PCODE ST_RG ST_MMR PCode_V
1 1 Ayeyarwady MMR017 Region ဧရာဝတီတိုင်းဒေသကြီး 9.4
2 2 Bago MMR111 Region ပဲခူးတိုင်းဒေသကြီး 9.4
3 4 Chin MMR004 State ချင်းပြည်နယ် 9.4
4 5 Kachin MMR001 State ကချင်ပြည်နယ် 9.4
5 6 Kayah MMR002 State ကယားပြည်နယ် 9.4
6 7 Kayin MMR003 State ကရင်ပြည်နယ် 9.4
7 8 Magway MMR009 Region မကွေးတိုင်းဒေသကြီး 9.4
8 9 Mandalay MMR010 Region မန္တလေးတိုင်းဒေသကြီး 9.4
9 10 Mon MMR011 State မွန်ပြည်နယ် 9.4
10 11 Nay Pyi Taw MMR018 Union Territory နေပြည်တော် 9.4
geometry
1 MULTIPOLYGON (((95.20798 15...
2 MULTIPOLYGON (((96.17964 19...
3 MULTIPOLYGON (((93.36931 24...
4 MULTIPOLYGON (((97.59674 28...
5 MULTIPOLYGON (((97.1759 19....
6 MULTIPOLYGON (((97.81508 16...
7 MULTIPOLYGON (((94.11699 22...
8 MULTIPOLYGON (((96.14023 23...
9 MULTIPOLYGON (((97.73689 15...
10 MULTIPOLYGON (((96.32013 20...qtm(mmr_admin1) # Plots the national boundaries of Myanmar
TH1.2.3 Creating sf data frame from aspatial data
The ACLED tibble contains coordinates, making it useful for plotting on our map as points. We can therefore use it to create an sf data frame using which we can plot our points on a map. The EPSG format of the import coordinates should be 4326, corresponding to the WGS84 Geographic Coordinate System.
acled_mya_sf <- st_as_sf(acled_mya, coords = c("longitude", "latitude"), crs = 4326)TH1.3 A brief summary of Myanmar and the Myanmar Conflict
The second largest country in Southeast Asia at 676,578 square kilometres and a member state of the Association of Southeast Asian Nations (ASEAN), Myanmar features fertile tropical deltas in the south and the rugged Himalayan foothills to its north. It shares borders with China to the north and northeast, Laos and Thailand to the east and Southeast, and Bangladesh and India to the west and northwest. Myanmar’s
Myanmar is organised into seven states, seven regions, and one union territory - its capital, Naypyitaw, located at the country’s centre. The following code chunk plots the administrative divisions of Myanmar into an interactive map.
tmap_mode('view')tmap mode set to interactive viewingtm_shape(mmr_admin1) + tm_polygons()tmap_mode('plot')tmap mode set to plottingCrucially, Myanmar is one of the world’s most ethnically diverse countries, with as many as 135 different ethnic groups boasting a rich tapestry of culture and religious history.
TH1.4 Data wrangling
TH1.4.1 Coordinate system conversion
The EPSG area code for Myanmar is 4239, while the WGS 84-compatible code is 32647. Since we’re creating an owin object later, we need to first convert our coordinate system.
acled_mya_sf <- acled_mya_sf %>% st_transform(crs = 32647)
mmr_admin1 <- mmr_admin1 %>% st_transform(crs = 32647)
tm_shape(mmr_admin1) + tm_polygons() + tm_shape(acled_mya_sf) + tm_dots(size = 0.05)
TH1.4.2 Data cleansing
Since the data is timestamped, we are able to plot and compare the frequency of conflict events over time. Before we do, though, we need to standardise the date stamps, then compartmentalise them into their year, month and day components, so that we can perform spatial-temporal point patterns analysis (STPPA) later. We will also aim to segregate events by whether or not they occurred before the coup on February 1, 2021.
A visualisation of the spatial-temporial distribution of points can be found in Annex A. Notice the consistent appearance throughout the entire study period of a large cluster of points towards the west of the country - roughly the location of Rahkine state on the border with Bangladesh.
Additionally, the ACLED dataset splits the conflict incidents in Shan state into North, South and East, and incidents in the Bago region into East and West. We need to combine these into
acled_mya_sf <- acled_mya_sf %>%
mutate(event_date = dmy(event_date)) %>%
mutate(DayOfYear = yday(event_date)) %>%
mutate(Month_num = format(event_date, "%Y-%m")) %>% # Year-Month format
mutate(Month_fac = factor(format(event_date, "%B %Y"))) %>% # Full month
mutate(Quarter_num = ((year(event_date) - 2021) * 4) + quarter(event_date)) %>% # Numbers quarters for STKDE
mutate(Quarter = paste(year(event_date), "-", quarter(event_date), "Q")) %>% # Quarter format
mutate(admin1 = case_when(
admin1 %in% c("Shan-North", "Shan-South", "Shan-East") ~ "Shan",
admin1 %in% c("Bago-East", "Bago-West") ~ "Bago",
TRUE ~ admin1
))
acled_mya_sfSimple feature collection with 53653 features and 34 fields
Geometry type: POINT
Dimension: XY
Bounding box: xmin: -208804.4 ymin: 1103500 xmax: 640934.5 ymax: 3042960
Projected CRS: WGS 84 / UTM zone 47N
# A tibble: 53,653 × 35
event_id_cnty event_date year time_precision disorder_type event_type
* <chr> <date> <dbl> <dbl> <chr> <chr>
1 MMR66329 2024-09-06 2024 1 Political violence Battles
2 MMR66334 2024-09-06 2024 1 Political violence Explosion…
3 MMR66353 2024-09-06 2024 1 Political violence Explosion…
4 MMR66365 2024-09-06 2024 1 Political violence Explosion…
5 MMR66368 2024-09-06 2024 1 Political violence Battles
6 MMR66422 2024-09-06 2024 1 Political violence Explosion…
7 MMR66432 2024-09-06 2024 1 Political violence Explosion…
8 MMR66434 2024-09-06 2024 1 Strategic developme… Strategic…
9 MMR66478 2024-09-06 2024 1 Political violence Explosion…
10 MMR66324 2024-09-05 2024 1 Political violence Explosion…
# ℹ 53,643 more rows
# ℹ 29 more variables: sub_event_type <chr>, actor1 <chr>, assoc_actor_1 <chr>,
# inter1 <dbl>, actor2 <chr>, assoc_actor_2 <chr>, inter2 <dbl>,
# interaction <dbl>, civilian_targeting <chr>, iso <dbl>, region <chr>,
# country <chr>, admin1 <chr>, admin2 <chr>, admin3 <chr>, location <chr>,
# geo_precision <dbl>, source <chr>, source_scale <chr>, notes <chr>,
# fatalities <dbl>, tags <chr>, timestamp <dbl>, geometry <POINT [m]>, …admin1_unique <- unique(acled_mya_sf$admin1)
admin1_unique [1] "Kachin" "Shan" "Magway" "Sagaing" "Chin"
[6] "Rakhine" "Mandalay" "Tanintharyi" "Kayah" "Yangon"
[11] "Kayin" "Mon" "Ayeyarwady" "Bago" "Nay Pyi Taw"quarter_numbers <- unique(acled_mya_sf$Quarter_num)
quarter_numbers [1] 15 14 13 12 11 10 9 8 7 6 5 4 3 2 1quarters <- unique(acled_mya_sf$Quarter) %>% unlist()
print(length(quarters))[1] 15quarters [1] "2024 - 3 Q" "2024 - 2 Q" "2024 - 1 Q" "2023 - 4 Q" "2023 - 3 Q"
[6] "2023 - 2 Q" "2023 - 1 Q" "2022 - 4 Q" "2022 - 3 Q" "2022 - 2 Q"
[11] "2022 - 1 Q" "2021 - 4 Q" "2021 - 3 Q" "2021 - 2 Q" "2021 - 1 Q"tm_shape(mmr_admin1) + tm_polygons() + tm_shape(acled_mya_sf) + tm_dots(size = 0.05)
tm_shape(mmr_admin1) + tm_polygons() + tm_shape(acled_mya_sf) + tm_dots(size = 0.05) + tm_facets(by="Quarter_num", free.coords=FALSE, drop.units = TRUE)
unique_type <- unique(acled_mya_sf$event_type)
unique_type[1] "Battles" "Explosions/Remote violence"
[3] "Strategic developments" "Protests"
[5] "Violence against civilians" "Riots" TH1.4.3 Using owin to confine study area within Myanmar borders
Finally, we need to create an owin object that will be combined with any ppp objects we create later for SPPA.
mmr_admin1_owin <- as.owin(mmr_admin1)
plot(mmr_admin1_owin)
# summary(mmr_admin1_owin)TH1.5 Performing Spatial-Temporal KDE
Our first order of business is to identify areas of consistently high conflict using spatial-temporal kernel density estimation (KDE). We can then zoom in on these areas for deeper research on why this is the case.
As always, we start by creating ppp objects out of our sf objects, and checking for duplicates.
acled_mya_sf_quarters <- acled_mya_sf %>% select(Quarter_num)
acled_mya_quarters_ppp <- as.ppp(acled_mya_sf_quarters)
any(duplicated(acled_mya_quarters_ppp))[1] TRUESince there are duplicates, we need to handle them using jittering.
acled_mya_quarters_ppp <- rjitter(acled_mya_quarters_ppp, retry=TRUE, nsim=1, drop=TRUE)
any(duplicated(acled_mya_quarters_ppp))[1] FALSEFinally, we join the owin object mapping the borders of Myanmar to the ppp object.
acled_mya_quarters_ppp <- acled_mya_quarters_ppp[mmr_admin1_owin]
plot(acled_mya_quarters_ppp)
summary(acled_mya_quarters_ppp)Marked planar point pattern: 53565 points
Average intensity 7.998196e-08 points per square unit
Coordinates are given to 16 decimal places
marks are numeric, of type 'double'
Summary:
Min. 1st Qu. Median Mean 3rd Qu. Max.
1.000 4.000 7.000 7.398 11.000 15.000
Window: polygonal boundary
3555 separate polygons (2977 holes)
vertices area relative.area
polygon 1 (hole) 4 -1.17922e-06 -1.76e-18
polygon 2 (hole) 4 -1.51784e-07 -2.27e-19
polygon 3 (hole) 16 -3.19682e-05 -4.77e-17
polygon 4 (hole) 4 -1.22376e-06 -1.83e-18
polygon 5 (hole) 4 -2.82562e-06 -4.22e-18
polygon 6 (hole) 4 -6.46982e-07 -9.66e-19
polygon 7 (hole) 4 -1.71724e-07 -2.56e-19
polygon 8 (hole) 8 -2.51690e-06 -3.76e-18
polygon 9 (hole) 4 -7.57720e-08 -1.13e-19
polygon 10 (hole) 4 -4.91084e-08 -7.33e-20
polygon 11 (hole) 6 -1.39001e-06 -2.08e-18
polygon 12 (hole) 3 -1.35988e-08 -2.03e-20
polygon 13 (hole) 4 -6.46177e-09 -9.65e-21
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polygon 15 (hole) 4 -6.96521e-09 -1.04e-20
polygon 16 (hole) 7 -9.66998e-06 -1.44e-17
polygon 17 (hole) 3 -2.89356e-10 -4.32e-22
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polygon 3542 (hole) 8 -1.25761e-05 -1.88e-17
polygon 3543 (hole) 6 -6.42552e-02 -9.59e-14
polygon 3544 (hole) 4 -5.15531e-03 -7.70e-15
polygon 3545 (hole) 6 -4.64838e-06 -6.94e-18
polygon 3546 (hole) 3 -7.03476e-08 -1.05e-19
polygon 3547 (hole) 4 -1.88745e-02 -2.82e-14
polygon 3548 (hole) 6 -1.94353e-06 -2.90e-18
polygon 3549 (hole) 16 -1.56064e-05 -2.33e-17
polygon 3550 (hole) 8 -2.24831e-06 -3.36e-18
polygon 3551 (hole) 4 -8.57161e-07 -1.28e-18
polygon 3552 (hole) 5 -3.71984e-07 -5.55e-19
polygon 3553 79 1.47390e+07 2.20e-05
polygon 3554 37623 6.60254e+11 9.86e-01
polygon 3555 (hole) 8 -3.42133e-06 -5.11e-18
enclosing rectangle: [-210008.6, 724647.6] x [1072026.3, 3158467.1] units
(934700 x 2086000 units)
Window area = 6.69714e+11 square units
Fraction of frame area: 0.343We can now perform spatial-temporal KDE (STKDE).
st_kde <- spattemp.density(acled_mya_quarters_ppp)Calculating trivariate smooth...Done.
Edge-correcting...Done.
Conditioning on time...Done.summary(st_kde)Spatiotemporal Kernel Density Estimate
Bandwidths
h = 42820.47 (spatial)
lambda = 0.0051 (temporal)
No. of observations
53565
Spatial bound
Type: polygonal
2D enclosure: [-210008.6, 724647.6] x [1072026, 3158467]
Temporal bound
[1, 15]
Evaluation
128 x 128 x 15 trivariate lattice
Density range: [9.584567e-26, 2.08449e-10]After performing STKDE, we are able to plot the quarterly STKDE objects between 2021 and September 2024. The full set of plots can be found in Annex A, but the plot for Q1 2021 (id 15) is of particular interest.
i = 15
plot(st_kde, quarter_numbers[i], override.par=FALSE, fix.range=TRUE, main=paste("Spatial-temporal KDE for", quarters[i]))
TH1.6 High Conflict Areas of Interest
The preliminary KDE plot identified large clusters of armed conflict in the Yangon area in the south off the Andaman sea, as well as the Saigaing and Chin areas to the central-west. These indications make good candidates for further investigation.
Additionally, we will be exploring the Rakhine area bordering Bangladesh, and the Kra Isthmus, the narrow isthmus linking central Thailand to Peninsula Malaysia. Rakhine state is the epicentre of the Rohingya migrant crisis,
TH1.6.1 Fixed-bandwidth KDE
TH1.6.2 Adaptive-bandwidth KDE
TH1.6.3 Nearest neighbour analysis
TH1.6.4 Second order spatial point patterns analysis
TH1.6.4.1 F-function
TH1.6.4.2 G-function
TH1.6.4.3 K-function
TH1.6.4.4 L-function
TH1.7 Rakhine State
TH1.7.1 Fixed-bandwidth KDE
TH1.7.2 Adaptive-bandwidth KDE
TH1.7.3 Nearest neighbour analysis
TH1.7.4 Second order spatial point patterns analysis
TH1.7.4.1 F-function
TH1.7.4.2 G-function
TH1.7.4.3 K-function
TH1.7.4.4 L-function
References
- Myanmar Information Management Unit. (n.d.). Country Overview. Retrieved 16 September 2024, from https://www.themimu.info/country-overview
- Raleigh, C., Kishi, R. & Linke, A. Political instability patterns are obscured by conflict dataset scope conditions, sources, and coding choices. Humanit Soc Sci Commun 10, 74 (2023). https://doi.org/10.1057/s41599-023-01559-4
- Sullivan, D. P. (2021, October 21). Dire consequences: Addressing the humanitarian fallout from myanmar’s coup. Refugees International; Refugees International. https://www.refugeesinternational.org/reports-briefs/dire-consequences-addressing-the-humanitarian-fallout-from-myanmars-coup/
Annex A: Full Quarterly STKDE Plots for Jan 2021- Sep 2024
for (i in 1: length(quarter_numbers)) {
plot(st_kde, quarter_numbers[i], override.par=FALSE, fix.range=TRUE, main=paste("Spatial-temporal KDE for", quarters[i]))
}
— OLD —
TH1.5 First Order SPPA - KDE
Kernel density estimation (KDE) serves to compute the intensity of a point distribution. It has two general steps: first to compute the point intensity, followed by spatial interpolation using a kernel function. Using KDE, we can determine the general region of Myanmar with the highest incidence of armed conflict.
TH1.5.1 Overall Fixed-Bandwidth KDE
TH1.5.2 Overall adaptive-bandwidth KDE
TH1.5.3 Quarterly fixed-bandwidth KDE
TH1.5.4 Quarterly adaptive-bandwidth KDE
TH1.6 First Order STPPA: Spatio-temporal KDE
TH1.7 First-order SPPA: Nearest Neighbour Analysis
To determine whether the plotted armed conflict events are clustered, dispersed or random, we can use the Clark-Evans test. Since tensions between Myanmar’s different ethnic groups already existed before the 2021 coup, it would be a good idea to run the test on the subsets of data both before and after the coup.
TH1.7 Second-order SPPA
Second order SPPA deals with variations in observations due to the way they interact with one another. The methods used for second order SPPA are the F-, G-, K- and L-functions. In this section, we will perform second-order SPPA on the conflict dataset, applying the F-, G-, K- and L-functions on subsets of the data before and after the 2021 coup.